News 2024
PDB-101 Focus: Peak Performance
12/11
PDB-101 Focus: Peak Performance
11/11
PDB-101 Focus: Peak Performance
10/11
PDB-101 Focus: Peak Performance
09/11
PDB-101 Focus: Peak Performance
08/15
PDB-101 Focus: Peak Performance
07/11
PDB-101 Focus: Peak Performance
06/11
Molecular Origami: Build 3D Paper Models of Protein Domains
06/04
Explore the Structural Biology of Evolution
05/26
Education Corner: Creating 3D Protein Models and Videos
05/20
PDB-101 Focus: Peak Performance
05/14
Video: How Neurons Communicate
05/07
Annual Report Published
04/30
Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?
04/30
April 24 to 30 is World Immunization Week
04/23
Celebrate DNA Day on April 25
04/21
April 22 is Earth Day
04/18
Spring Newsletter Published
04/16
Paper Published: Folding paper models of biostructures for outreach and education
04/14
Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?
04/09
Video: Immunology and Cancer
04/02
Register Now for a Virtual Deep Dive into Computed Structure Model Exploration at RCSB.org
04/01
Explore Mechanism and Catalytic Site Annotations
03/31
Take the EDMAPS.rcsb.org Survey
03/29
Education Corner: Bringing Proteins to Life
03/26
Register for the April 1 Mol* Virtual Office Hour
03/24
March 24 is World TB Day
03/21
Meet RCSB PDB at the #DiscoverBMB Meeting
03/20
Paper Published: Visualizing groups of PDB structures and CSMs
03/17
March 11-17: Brain Awareness Week
03/11
Poster Prize Awarded at The Biophysical Society Meeting
03/06
March 4 is International HPV Awareness Day
02/29
February 29 is Rare Disease Day
02/27
Register for the March 28 Office Hour to Ask A Biocurator
02/25
PDB-101 Focus: Peak Performance
02/16
Use a Python Package to Access the RCSB PDB Search API
02/12
Molecular Valentines
02/11
Meet RCSB PDB at The Biophysical Society Meeting
02/06
February 4 is World Cancer Day
02/01
Register for VIZBI 2024 (March 13–15)
01/30
Notice: NGL Viewer Deprecation
01/30
Prizes Awarded at The Biophysical Society Japan Meeting
01/28
Take the CSM User Survey and Win
01/24
Register for the February 13 Mol* Webinar
01/19
Undergrads: Spend your summer with RCSB PDB
01/18
Register for the February 5 RCSB.org Office Hour
01/16
Celebrate #NationalMilkDay
01/10
Winter Newsletter Published
01/08
Applications Open for Director
01/07
Top Molecules of the Month in 2023
01/04
2024202320222021202020192018201720162015

Explore Mechanism and Catalytic Site Annotations

03/31 

<I>From the Annotations tab, select the Explore in 3D option to view in Mol*</I>From the Annotations tab, select the Explore in 3D option to view in Mol*

Data on catalytically active residues from the Mechanism and Catalytic Site Atlas (M-CSA) have been mapped to >1000 PDB structures at RCSB.org.

From the Annotations tab for these entries

  • access M-CSA data annotations (example)
  • visualize active sites using Mol* (example)
  • launch a structure motif search to find these active sites in other experimentally-determined PDB structures and in Computed Structure Models (CSMs; example)

Advanced Search: Structure Motif can be used to identify all structures with M-CSA annotations. User guide documentation is available.

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites.
Ribeiro AJM et al. (2017) Nucleic Acids Res: 46, D618-D623. DOI: 10.1093/nar/gkx1012

Past news and events have been reported at the RCSB PDB website and past Newsletters.

beta