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PDB and Data Archiving Curriculum

A Deep Dive into Computed Structure Model Exploration at RCSB.org

Webinar hosted by RCSB PDB/Rutgers Institute for Quantitative Biomedicine | April 30, 2024

Learn how to use RCSB.org features to navigate 3D predicted protein structures in the context of experimentally-determined PDB structures. Two case studies are provided: Low-density Lipoprotein Receptor Adapter Protein 1 (LDLRAP1) and Class II aminoacyl-tRNA synthetases.

After watching the videos featured in this course, you will be able to:

  • Browse Annotations to find relevant PDB Structures and related Computed Structure Models
  • Group search hits to get non-redundant results
  • Explore sequences in 3D context
  • Align and analyze multiple related 3D structures
  • Search structures by Sequence and 3D Structure similarity
  • Use Structure Motif search

Additional materials for this course are available:

Click on the image below to play the video.

Welcome and Introduction to RCSB.org

Stephen K. Burley

Director, RCSB PDB

Case Study: Low-density Lipoprotein Receptor Adapter Protein 1 (LDLRAP1)

Yana Rose

Scientific Software Developer & Data Architect, RCSB PDB/UCSD

Case Study: Class II Aminoacyl-tRNA Synthetases

Sebastian Bittrich

Scientific Software Developer, RCSB PDB/UCSD

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